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1
Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics
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Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

Ardui, Simon ; Ameur, Adam ; Vermeesch, Joris R ; Hestand, Matthew S

Nucleic acids research, 2018-03-16, Vol.46 (5), p.2159-2168 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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2
Ensembl 2018
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Ensembl 2018

Zerbino, Daniel R ; Achuthan, Premanand ; Akanni, Wasiu ; Amode, M Ridwan ; Barrell, Daniel ; Bhai, Jyothish ; Billis, Konstantinos ; Cummins, Carla ; Gall, Astrid ; Girón, Carlos García ; Gil, Laurent ; Gordon, Leo ; Haggerty, Leanne ; Haskell, Erin ; Hourlier, Thibaut ; Izuogu, Osagie G ; Janacek, Sophie H ; Juettemann, Thomas ; To, Jimmy Kiang ; Laird, Matthew R ; Lavidas, Ilias ; Liu, Zhicheng ; Loveland, Jane E ; Maurel, Thomas ; McLaren, William ; Moore, Benjamin ; Mudge, Jonathan ; Murphy, Daniel N ; Newman, Victoria ; Nuhn, Michael ; Ogeh, Denye ; Ong, Chuang Kee ; Parker, Anne ; Patricio, Mateus ; Riat, Harpreet Singh ; Schuilenburg, Helen ; Sheppard, Dan ; Sparrow, Helen ; Taylor, Kieron ; Thormann, Anja ; Vullo, Alessandro ; Walts, Brandon ; Zadissa, Amonida ; Frankish, Adam ; Hunt, Sarah E ; Kostadima, Myrto ; Langridge, Nicholas ; Martin, Fergal J ; Muffato, Matthieu ; Perry, Emily ; Ruffier, Magali ; Staines, Dan M ; Trevanion, Stephen J ; Aken, Bronwen L ; Cunningham, Fiona ; Yates, Andrew ; Flicek, Paul

Nucleic acids research, 2018-01-04, Vol.46 (D1), p.D754-D761 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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3
ClinVar: improving access to variant interpretations and supporting evidence
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ClinVar: improving access to variant interpretations and supporting evidence

Landrum, Melissa J ; Lee, Jennifer M ; Benson, Mark ; Brown, Garth R ; Chao, Chen ; Chitipiralla, Shanmuga ; Gu, Baoshan ; Hart, Jennifer ; Hoffman, Douglas ; Jang, Wonhee ; Karapetyan, Karen ; Katz, Kenneth ; Liu, Chunlei ; Maddipatla, Zenith ; Malheiro, Adriana ; McDaniel, Kurt ; Ovetsky, Michael ; Riley, George ; Zhou, George ; Holmes, J Bradley ; Kattman, Brandi L ; Maglott, Donna R

Nucleic acids research, 2018-01-04, Vol.46 (D1), p.D1062-D1067 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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4
The Encyclopedia of DNA elements (ENCODE): data portal update
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The Encyclopedia of DNA elements (ENCODE): data portal update

Davis, Carrie A ; Hitz, Benjamin C ; Sloan, Cricket A ; Chan, Esther T ; Davidson, Jean M ; Gabdank, Idan ; Hilton, Jason A ; Jain, Kriti ; Baymuradov, Ulugbek K ; Narayanan, Aditi K ; Onate, Kathrina C ; Graham, Keenan ; Miyasato, Stuart R ; Dreszer, Timothy R ; Strattan, J Seth ; Jolanki, Otto ; Tanaka, Forrest Y ; Cherry, J Michael

Nucleic acids research, 2018-01-04, Vol.46 (D1), p.D794-D801 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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5
LinkedOmics: analyzing multi-omics data within and across 32 cancer types
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LinkedOmics: analyzing multi-omics data within and across 32 cancer types

Vasaikar, Suhas V ; Straub, Peter ; Wang, Jing ; Zhang, Bing

Nucleic acids research, 2018-01-04, Vol.46 (D1), p.D956-D963 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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6
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics
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Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

Fagerberg, Linn ; Hallström, Björn M ; Oksvold, Per ; Kampf, Caroline ; Djureinovic, Dijana ; Odeberg, Jacob ; Habuka, Masato ; Tahmasebpoor, Simin ; Danielsson, Angelika ; Edlund, Karolina ; Asplund, Anna ; Sjöstedt, Evelina ; Lundberg, Emma ; Szigyarto, Cristina Al-Khalili ; Skogs, Marie ; Takanen, Jenny Ottosson ; Berling, Holger ; Tegel, Hanna ; Mulder, Jan ; Nilsson, Peter ; Schwenk, Jochen M ; Lindskog, Cecilia ; Danielsson, Frida ; Mardinoglu, Adil ; Sivertsson, Åsa ; von Feilitzen, Kalle ; Forsberg, Mattias ; Zwahlen, Martin ; Olsson, IngMarie ; Navani, Sanjay ; Huss, Mikael ; Nielsen, Jens ; Ponten, Fredrik ; Uhlén, Mathias

Molecular & cellular proteomics, 2014-02, Vol.13 (2), p.397-406 [Peer Reviewed Journal]

United States: American Society for Biochemistry & Molecular Biology (ASBMB)

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7
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
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IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding

Mészáros, Bálint ; Erdős, Gábor ; Dosztányi, Zsuzsanna

Nucleic acids research, 2018-07-02, Vol.46 (W1), p.W329-W337 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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8
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
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DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions

Karagkouni, Dimitra ; Paraskevopoulou, Maria D ; Chatzopoulos, Serafeim ; Vlachos, Ioannis S ; Tastsoglou, Spyros ; Kanellos, Ilias ; Papadimitriou, Dimitris ; Kavakiotis, Ioannis ; Maniou, Sofia ; Skoufos, Giorgos ; Vergoulis, Thanasis ; Dalamagas, Theodore ; Hatzigeorgiou, Artemis G

Nucleic acids research, 2018-01-04, Vol.46 (D1), p.D239-D245 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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9
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Kumar, Sudhir ; Stecher, Glen ; Li, Michael ; Knyaz, Christina ; Tamura, Koichiro ;Battistuzzi, Fabia Ursula

Molecular biology and evolution, 2018-06, Vol.35 (6), p.1547-1549 [Peer Reviewed Journal]

United States: Oxford University Press (OUP)

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10
Minimum Information about a Biosynthetic Gene cluster
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Minimum Information about a Biosynthetic Gene cluster

Medema, Marnix H ; Kottmann, Renzo ; Yilmaz, Pelin ; Cummings, Matthew ; Biggins, John B ; Blin, Kai ; de Bruijn, Irene ; Chooi, Yit Heng ; Claesen, Jan ; Coates, R Cameron ; Cruz-Morales, Pablo ; Duddela, Srikanth ; Düsterhus, Stephanie ; Edwards, Daniel J ; Fewer, David P ; Garg, Neha ; Geiger, Christoph ; Gomez-Escribano, Juan Pablo ; Greule, Anja ; Hadjithomas, Michalis ; Haines, Anthony S ; Helfrich, Eric J N ; Hillwig, Matthew L ; Ishida, Keishi ; Jones, Adam C ; Jones, Carla S ; Jungmann, Katrin ; Kegler, Carsten ; Kim, Hyun Uk ; Kötter, Peter ; Krug, Daniel ; Masschelein, Joleen ; Melnik, Alexey V ; Mantovani, Simone M ; Monroe, Emily A ; Moore, Marcus ; Moss, Nathan ; Nützmann, Hans-Wilhelm ; Pan, Guohui ; Pati, Amrita ; Petras, Daniel ; Reen, F Jerry ; Rosconi, Federico ; Rui, Zhe ; Tian, Zhenhua ; Tobias, Nicholas J ; Tsunematsu, Yuta ; Wiemann, Philipp ; Wyckoff, Elizabeth ; Yan, Xiaohui ; Yim, Grace ; Yu, Fengan ; Xie, Yunchang ; Aigle, Bertrand ; Apel, Alexander K ; Balibar, Carl J ; Balskus, Emily P ; Barona-Gómez, Francisco ; Bechthold, Andreas ; Bode, Helge B ; Borriss, Rainer ; Brady, Sean F ; Brakhage, Axel A ; Caffrey, Patrick ; Cheng, Yi-Qiang ; Clardy, Jon ; Cox, Russell J ; De Mot, René ; Donadio, Stefano ; Donia, Mohamed S ; van der Donk, Wilfred A ; Dorrestein, Pieter C ; Doyle, Sean ; Driessen, Arnold J M ; Ehling-Schulz, Monika ; Entian, Karl-Dieter ; Fischbach, Michael A ; Gerwick, Lena ; Gerwick, William H ; Gross, Harald ; Gust, Bertolt ; Hertweck, Christian ; Höfte, Monica ; Jensen, Susan E ; Ju, Jianhua ; Katz, Leonard ; Kaysser, Leonard ; Klassen, Jonathan L ; Keller, Nancy P ; Kormanec, Jan ; Kuipers, Oscar P ; Kuzuyama, Tomohisa ; Kyrpides, Nikos C ; Kwon, Hyung-Jin ; Lautru, Sylvie ; Lavigne, Rob ; Lee, Chia Y ; Linquan, Bai ; Liu, Xinyu ; Liu, Wen ; ...

Nature chemical biology, 2015-08-18, Vol.11 (9), p.625-631 [Peer Reviewed Journal]

Springer Science and Business Media LLC

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11
Advanced glycoxidation and lipoxidation end products (AGEs and ALEs): an overview of their mechanisms of formation
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Advanced glycoxidation and lipoxidation end products (AGEs and ALEs): an overview of their mechanisms of formation

Vistoli, G ; De Maddis, D ; Cipak, A ; Zarkovic, N ; Carini, M ; Aldini, G

Free radical research, 2013-06-17, Vol.47 (sup1), p.3-27 [Peer Reviewed Journal]

England: Informa UK Limited

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12
On the relationship between cumulative correlation coefficients and the quality of crystallographic data sets: CC1/2 and Data Quality
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On the relationship between cumulative correlation coefficients and the quality of crystallographic data sets: CC1/2 and Data Quality

Wang, Jimin ; Brudvig, Gary W ; Batista, Victor S ; Moore, Peter B

Protein Science, 2017-10-27, Vol.26 (12) [Peer Reviewed Journal]

United States: The Protein Society

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13
Objective comparison of particle tracking methods
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Objective comparison of particle tracking methods

Chenouard, Nicolas ; Smal, Ihor ; de Chaumont, Fabrice ; Maška, Martin ; Sbalzarini, Ivo F ; Gong, Yuanhao ; Cardinale, Janick ; Carthel, Craig ; Coraluppi, Stefano ; Winter, Mark ; Cohen, Andrew R ; Godinez, William J ; Rohr, Karl ; Kalaidzidis, Yannis ; Liang, Liang ; Duncan, James ; Shen, Hongying ; Xu, Yingke ; Magnusson, Klas E G ; Jaldén, Joakim ; Blau, Helen M ; Paul-Gilloteaux, Perrine ; Roudot, Philippe ; Kervrann, Charles ; Waharte, François ; Tinevez, Jean-Yves ; Shorte, Spencer L ; Willemse, Joost ; Celler, Katherine ; van Wezel, Gilles P ; Dan, Han-Wei ; Tsai, Yuh-Show ; de Solórzano, Carlos Ortiz ; Olivo-Marin, Jean-Christophe ; Meijering, Erik

Nature methods, 2014-01-19, Vol.11 (3), p.281-289 [Peer Reviewed Journal]

Springer Science and Business Media LLC

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14
SDM: a server for predicting effects of mutations on protein stability
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SDM: a server for predicting effects of mutations on protein stability

Pandurangan, Arun Prasad ; Ochoa-Montaño, Bernardo ; Ascher, David B ; Blundell, Tom L

Nucleic acids research, 2017-07-03, Vol.45 (W1), p.W229-W235 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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15
Oligomeric Structure of Anabaena Sensory Rhodopsin in a Lipid Bilayer Environment by Combining Solid-State NMR and Long-range DEER Constraints
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Oligomeric Structure of Anabaena Sensory Rhodopsin in a Lipid Bilayer Environment by Combining Solid-State NMR and Long-range DEER Constraints

Milikisiyants, Sergey ; Wang, Shenlin ; Munro, Rachel A ; Donohue, Matthew ; Ward, Meaghan E ; Bolton, David ; Brown, Leonid S ; Smirnova, Tatyana I ; Ladizhansky, Vladimir ; Smirnov, Alex I

Journal of Molecular Biology, 2017-06-01, Vol.429 (12) [Peer Reviewed Journal]

United States: Elsevier

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16
NOREVA: normalization and evaluation of MS-based metabolomics data
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NOREVA: normalization and evaluation of MS-based metabolomics data

Li, Bo ; Tang, Jing ; Yang, Qingxia ; Li, Shuang ; Cui, Xuejiao ; Li, Yinghong ; Chen, Yuzong ; Xue, Weiwei ; Li, Xiaofeng ; Zhu, Feng

Nucleic acids research, 2017-07-03, Vol.45 (W1), p.W162-W170 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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17
COSMIC: the Catalogue Of Somatic Mutations In Cancer
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COSMIC: the Catalogue Of Somatic Mutations In Cancer

Tate, John G ; Bamford, Sally ; Jubb, Harry C ; Sondka, Zbyslaw ; Beare, David M ; Bindal, Nidhi ; Boutselakis, Harry ; Cole, Charlotte G ; Creatore, Celestino ; Dawson, Elisabeth ; Fish, Peter ; Harsha, Bhavana ; Hathaway, Charlie ; Jupe, Steve C ; Kok, Chai Yin ; Noble, Kate ; Ponting, Laura ; Ramshaw, Christopher C ; Rye, Claire E ; Speedy, Helen E ; Stefancsik, Ray ; Thompson, Sam L ; Wang, Shicai ; Ward, Sari ; Campbell, Peter J ; Forbes, Simon A

Nucleic acids research, 2019-01-08, Vol.47 (D1), p.D941-D947 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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18
Mitochondrial Stress Induces Chromatin Reorganization to Promote Longevity and UPRmt
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Mitochondrial Stress Induces Chromatin Reorganization to Promote Longevity and UPRmt

Tian, Ye ; Garcia, Gilberto ; Bian, Qian ; Steffen, Kristan K ; Joe, Larry ; Wolff, Suzanne ; Meyer, Barbara J ; Dillin, Andrew

Cell (Cambridge), 2016-05-19, Vol.165 (5), p.1197-1208 [Peer Reviewed Journal]

Elsevier Inc

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19
WormBase 2017: molting into a new stage
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WormBase 2017: molting into a new stage

Lee, Raymond Y N ; Howe, Kevin L ; Harris, Todd W ; Arnaboldi, Valerio ; Cain, Scott ; Chan, Juancarlos ; Chen, Wen J ; Davis, Paul ; Gao, Sibyl ; Grove, Christian ; Kishore, Ranjana ; Muller, Hans-Michael ; Nakamura, Cecilia ; Nuin, Paulo ; Paulini, Michael ; Raciti, Daniela ; Rodgers, Faye ; Russell, Matt ; Schindelman, Gary ; Tuli, Mary Ann ; Van Auken, Kimberly ; Wang, Qinghua ; Williams, Gary ; Wright, Adam ; Yook, Karen ; Berriman, Matthew ; Kersey, Paul ; Schedl, Tim ; Stein, Lincoln ; Sternberg, Paul W

Nucleic acids research, 2018-01-04, Vol.46 (D1), p.D869-D874 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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20
SWISS-MODEL: homology modelling of protein structures and complexes
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SWISS-MODEL: homology modelling of protein structures and complexes

Waterhouse, Andrew ; Bertoni, Martino ; Bienert, Stefan ; Studer, Gabriel ; Tauriello, Gerardo ; Gumienny, Rafal ; Heer, Florian T ; de Beer, Tjaart A P ; Rempfer, Christine ; Bordoli, Lorenza ; Lepore, Rosalba ; Schwede, Torsten

Nucleic acids research, 2018-07-02, Vol.46 (W1), p.W296-W303 [Peer Reviewed Journal]

England: Oxford University Press (OUP)

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