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Genome-Wide DNA Methylation Profiles Indicate CD8+ T Cell Hypermethylation in Multiple Sclerosis

Bos, Steffan D ; Page, Christian M ; Andreassen, Bettina K ; Elboudwarej, Emon ; Gustavsen, Marte W ; Briggs, Farren ; Quach, Hong ; Leikfoss, Ingvild S ; Bjølgerud, Anja ; Berge, Tone ; Harbo, Hanne F ; Barcellos, Lisa F

Christian Page (2016) DNA Methylation and Exome Chip Analysis in Complex Disease. Doctoral thesis. http://urn.nb.no/URN:NBN:no-56454 [Peer Reviewed Journal]

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Genome-Wide Assessment of Differential DNA Methylation Associated with Autoantibody Production in Systemic Lupus Erythematosus

Chung, Sharon A ; Nititham, Joanne ; Elboudwarej, Emon ; Quach, Hong L ; Taylor, Kimberly E ; Barcellos, Lisa F ; Criswell, Lindsey A ;Crispin, Jose (editor)

PLoS ONE, 2015, Vol.10(7) [Peer Reviewed Journal]

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Causal Effect of Genetic Variants Associated With Body Mass Index on Multiple Sclerosis Susceptibility

Gianfrancesco, Milena A ; Glymour, M. Maria ; Walter, Stefan ; Rhead, Brooke ; Shao, Xiaorong ; Shen, Ling ; Quach, Hong ; Hubbard, Alan ; Jónsdóttir, Ingileif ; Stefánsson, Kári ; Strid, Pernilla ; Hillert, Jan ; Hedström, Anna ; Olsson, Tomas ; Kockum, Ingrid ; Schaefer, Catherine ; Alfredsson, Lars ; Barcellos, Lisa F

American Journal of Epidemiology, 2017, Vol. 185(3), pp.162-171 [Peer Reviewed Journal]

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Increased DNA methylation of SLFN12 in CD4+ and CD8+ T cells from multiple sclerosis patients

Rhead, Brooke ; Brorson, Ina Skaara ; Berge, Tone ; Adams, Cameron ; Quach, Hong ; Moen, Stine Marit ; Berg-Hansen, Pål ; Celius, Elisabeth Gulowsen ; Sangurdekar, Dipen ; Bronson, Paola G ; Lea, Rodney A ; Burnard, Sean ; Maltby, Vicky E ; Scott, Rodney J ; Lechner-Scott, Jeannette ; Harbo, Hanne Flinstad ; Bos, Steffan Daniel ; Barcellos, Lisa F

Rhead, Brooke Brorson, Ina Skaara Berge, Tone Adams, Cameron Quach, Hong Moen, Stine Marit Berg-Hansen, Pål Celius, Elisabeth Gulowsen Sangurdekar, Dipen Bronson, Paola G. Lea, Rodney A. Burnard, Sean Maltby, Vicky E. Scott, Rodney J Lechner-Scott, Jeannette Harbo, Hanne Flinstad Bos, Steffan Daniel Barcellos, Lisa F . Increased DNA methylation of SLFN12 in CD4+ and CD8+ T cells from multiple sclerosis patients. PLoS ONE. 2018, 13(10) [Peer Reviewed Journal]

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Comparison of DNA methylation measured by Illumina 450K and EPIC BeadChips in blood of newborns and 14-year-old children

Solomon, Olivia ; Macisaac, Julie ; Quach, Hong ; Tindula, Gwen ; Kobor, Michael S ; Huen, Karen ; Meaney, Michael J ; Eskenazi, Brenda ; Barcellos, Lisa F ; Holland, Nina

Epigenetics, 03 June 2018, Vol.13(6), pp.655-664 [Peer Reviewed Journal]

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Adverse socioeconomic position during the life course is associated with multiple sclerosis

Briggs, Farren B S ; Acuña, Brigid S ; Shen, Ling ; Bellesis, Kalliope H ; Ramsay, Patricia P ; Quach, Hong ; Bernstein, Allan ; Schaefer, Catherine ; Barcellos, Lisa F

Journal of Epidemiology and Community Health (1979-), 1 July 2014, Vol.68(7), pp.622-629 [Peer Reviewed Journal]

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Considerations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies

Yousefi, Paul ; Huen, Karen ; Schall, Raul Aguilar ; Decker, Anna ; Elboudwarej, Emon ; Quach, Hong ; Barcellos, Lisa ; Holland, Nina

Epigenetics, 01 November 2013, Vol.8(11), pp.1141-1152 [Peer Reviewed Journal]

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AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator

Okushima, Yoko ; Mitina, Irina ; Quach, Hong L. ; Theologis, Athanasios

Plant Journal, July 2005, Vol.43(1), pp.29-46 [Peer Reviewed Journal]

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Methylation profiles of untreated MS patients and controls for whole blood, CD4 + and CD8 + T cells show no consistent change of methylation levels in MS

Bos, Steffan D ; Page, Christian M ; Andreassen, Bettina K ; Elboudwarej, Emon ; Gustavsen, Marte W ; Briggs, Farren ; Quach, Hong ; Leikfoss, Ingvild ; Bjølgerud, Anja ; Berge, Tone ; Harbo, Hanne F ; Barcellos, Lisa

Journal of Neuroimmunology, 15 October 2014, Vol.275(1-2), pp.49-50 [Peer Reviewed Journal]

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Hypomethylation within gene promoter regions and type 1 diabetes in discordant monozygotic twins

Elboudwarej, Emon ; Cole, Michael ; Briggs, Farren B.S ; Fouts, Alexandra ; Fain, Pamela R ; Quach, Hong ; Quach, Diana ; Sinclair, Elizabeth ; Criswell, Lindsey A ; Lane, Julie A ; Steck, Andrea K ; Barcellos, Lisa F ; Noble, Janelle A

Journal of Autoimmunity, April 2016, Vol.68, pp.23-29 [Peer Reviewed Journal]

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Genome-wide profiling identifies associations between lupus nephritis and differential methylation of genes regulating tissue hypoxia and type 1 interferon responses

Mok, Amanda ; Solomon, Olivia ; Nayak, Renuka R ; Coit, Patrick ; Quach, Hong L ; Nititham, Joanne ; Sawalha, Amr H ; Barcellos, Lisa F ; Criswell, Lindsey A ; Chung, Sharon A

Lupus Science & Medicine, 7 December 2016, Vol.3(1) [Peer Reviewed Journal]

Lupus Foundation of America

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Obesity during childhood and adolescence increases susceptibility to multiple sclerosis after accounting for established genetic and environmental risk factors

Gianfrancesco, Milena A ; Acuna, Brigid ; Shen, Ling ; Briggs, Farren B.S ; Quach, Hong ; Bellesis, Kalliope H ; Bernstein, Allan ; Hedstrom, Anna K ; Kockum, Ingrid ; Alfredsson, Lars ; Olsson, Tomas ; Schaefer, Catherine ; Barcellos, Lisa F

Obesity Research & Clinical Practice, September 2014, Vol.8(5), pp.e435-e447 [Peer Reviewed Journal]

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MS Sunshine Study: Sun Exposure But Not Vitamin D Is Associated with Multiple Sclerosis Risk in Blacks and Hispanics

Langer-Gould, Annette ; Lucas, Robyn ; Xiang, Anny H ; Chen, Lie H ; Wu, Jun ; Gonzalez, Edlin ; Haraszti, Samantha ; Smith, Jessica B ; Quach, Hong ; Barcellos, Lisa F

Nutrients, 2018, Vol.10(3) [Peer Reviewed Journal]

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Vitamin D-Binding Protein Polymorphisms, 25-Hydroxyvitamin D, Sunshine and Multiple Sclerosis

Langer-Gould, Annette ; Lucas, Robyn M ; Xiang, Anny H ; Wu, Jun ; Chen, Lie H ; Gonzales, Edlin ; Haraszti, Samantha ; Smith, Jessica B ; Quach, Hong ; Barcellos, Lisa F

Nutrients, 2018, Vol.10(2) [Peer Reviewed Journal]

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15
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Genetic predictors of relapse rate in pediatric MS

Graves, Jennifer S ; Barcellos, Lisa F ; Shao, Xiaorong ; Noble, Janelle ; Mowry, Ellen M ; Quach, Hong ; Belman, Anita ; Casper, T. Charles ; Krupp, Lauren B ; Waubant, Emmanuelle

Multiple Sclerosis Journal, October 2016, Vol.22(12), pp.1528-1535 [Peer Reviewed Journal]

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Mendelian randomization shows a causal effect of low vitamin D on multiple sclerosis risk

Rhead, Brooke ; Bäärnhielm, Maria ; Gianfrancesco, Milena ; Mok, Amanda ; Shao, Xiaorong ; Quach, Hong ; Shen, Ling ; Schaefer, Catherine ; Link, Jenny ; Gyllenberg, Alexandra ; Hedström, Anna Karin ; Olsson, Tomas ; Hillert, Jan ; Kockum, Ingrid ; Glymour, M. Maria ; Alfredsson, Lars ; Barcellos, Lisa F

Neurology: Genetics, 2016, Vol.2(5) [Peer Reviewed Journal]

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17
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A Child’s HLA-DRB1 genotype increases maternal risk of systemic lupus erythematosus

Cruz, Giovanna I ; Shao, Xiaorong ; Quach, Hong ; Ho, Kimberly A ; Sterba, Kirsten ; Noble, Janelle A ; Patsopoulos, Nikolaos A ; Busch, Michael P ; Triulzi, Darrell J ; Wong, Wendy S.W ; Solomon, Benjamin D ; Niederhuber, John E ; Criswell, Lindsey A ; Barcellos, Lisa F

Journal of Autoimmunity, November 2016, Vol.74, pp.201-207 [Peer Reviewed Journal]

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Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis

Sawcer, Stephen ; Hellenthal, Garrett ; Pirinen, Matti ; Spencer, Chris C.A ; Patsopoulos, Nikolaos A ; Moutsianas, Loukas ; Dilthey, Alexander ; Su, Zhan ; Freeman, Colin ; Hunt, Sarah E ; Edkins, Sarah ; Gray, Emma ; Booth, David R ; Potter, Simon C ; Goris, An ; Band, Gavin ; Oturai, Annette Bang ; Strange, Amy ; Saarela, Janna ; Bellenguez, Céline ; Fontaine, Bertrand ; Gillman, Matthew ; Hemmer, Bernhard ; Gwilliam, Rhian ; Zipp, Frauke ; Jayakumar, Alagurevathi ; Martin, Roland ; Leslie, Stephen ; Hawkins, Stanley ; Giannoulatou, Eleni ; D’alfonso, Sandra ; Blackburn, Hannah ; Boneschi, Filippo Martinelli ; Liddle, Jennifer ; Harbo, Hanne F ; Perez, Marc L ; Spurkland, Anne ; Waller, Matthew J ; Mycko, Marcin P ; Ricketts, Michelle ; Comabella, Manuel ; Hammond, Naomi ; Kockum, Ingrid ; Mccann, Owen T ; Ban, Maria ; Whittaker, Pamela ; Kemppinen, Anu ; Weston, Paul ; Hawkins, Clive ; Widaa, Sara ; Zajicek, John ; Dronov, Serge ; Robertson, Neil ; Bumpstead, Suzannah J ; Barcellos, Lisa F ; Ravindrarajah, Rathi ; Abraham, Roby ; Alfredsson, Lars ; Ardlie, Kristin ; Aubin, Cristin ; Baker, Amie ; Baker, Katharine ; Baranzini, Sergio E ; Bergamaschi, Laura ; Bergamaschi, Roberto ; Bernstein, Allan ; Berthele, Achim ; Boggild, Mike ; Bradfield, Jonathan P ; Brassat, David ; Broadley, Simon A ; Buck, Dorothea ; Butzkueven, Helmut ; Capra, Ruggero ; Carroll, William M ; Cavalla, Paola ; Celius, Elisabeth G ; Cepok, Sabine ; Chiavacci, Rosetta ; Clerget-Darpoux, Françoise ; Clysters, Katleen ; Comi, Giancarlo ; Cossburn, Mark ; Cournu-Rebeix, Isabelle ; Cox, Mathew B ; Cozen, Wendy ; Cree, Bruce A.C ; Cross, Anne H ; Cusi, Daniele ; Daly, Mark J ; Davis, Emma ; De Bakker, Paul I.W ; Debouverie, Marc ; D’hooghe, Marie Beatrice ; Dixon, Katherine ; Dobosi, Rita ; Dubois, Bénédicte ; Ellinghaus, David ; Elovaara, Irina ; Esposito, Federica ; Fontenille, Claire ; Foote, Simon ; Franke, Andre ; Galimberti, Daniela ; Ghezzi, Angelo ; Glessner, Joseph ; Gomez, Refujia ; Gout, Olivier ; Graham, Colin ; Grant, Struan F.A ; Guerini, Franca Rosa ; Hakonarson, Hakon ; Hall, Per ; Hamsten, Anders ; Hartung, Hans-Peter ; Heard, Rob N ; Heath, Simon ; Hobart, Jeremy ; Hoshi, Muna ; Infante-Duarte, Carmen ; Ingram, Gillian ; Ingram, Wendy ; Islam, Talat ; Jagodic, Maja ; Kabesch, Michael ; Kermode, Allan G ; Kilpatrick, Trevor J ; Kim, Cecilia ; Klopp, Norman ; Koivisto, Keijo ; Larsson, Malin ; Lathrop, Mark ; Lechner-Scott, Jeannette S ; Leone, Maurizio A ; Leppä, Virpi ; Liljedahl, Ulrika ; Bomfim, Izaura Lima ; Lincoln, Robin R ; Link, Jenny ; Liu, Jianjun ; Lorentzen, Åslaug R ; Lupoli, Sara ; Macciardi, Fabio ; Mack, Thomas ; Marriott, Mark ; Martinelli, Vittorio ; Mason, Deborah ; Mccauley, Jacob L ; Mentch, Frank ; Mero, Inger-Lise ; Mihalova, Tania ; Montalban, Xavier ; Mottershead, John ; Myhr, Kjell-Morten ; Naldi, Paola ; Ollier, William ; Page, Alison ; Palotie, Aarno ; Pelletier, Jean ; Piccio, Laura ; Pickersgill, Trevor ; Piehl, Fredrik ; Pobywajlo, Susan ; Quach, Hong L ; Ramsay, Patricia P ; Reunanen, Mauri ; Reynolds, Richard ; Rioux, John D ; Rodegher, Mariaemma ; Roesner, Sabine ; Rubio, Justin P ; Rückert, Ina-Maria ; Salvetti, Marco ; Salvi, Erika ; Santaniello, Adam ; Schaefer, Catherine A ; Schreiber, Stefan ; Schulze, Christian ; Scott, Rodney J ; Sellebjerg, Finn ; Selmaj, Krzysztof W ; Sexton, David ; Shen, Ling ; Simms-Acuna, Brigid ; Skidmore, Sheila ; Sleiman, Patrick M.A ; Smestad, Cathrine ; Sørensen, Per Soelberg ; Søndergaard, Helle Bach ; Stankovich, Jim ; Strange, Richard C ; Sulonen, Anna-Maija ; Sundqvist, Emilie ; Syvänen, Ann-Christine ; Taddeo, Francesca ; Taylor, Bruce ; Blackwell, Jenefer M ; Tienari, Pentti ; Bramon, Elvira ; Tourbah, Ayman ; Brown, Matthew A ; Tronczynska, Ewa ; Casas, Juan P ; Tubridy, Niall ; Corvin, Aiden ; Vickery, Jane ; Jankowski, Janusz ; Villoslada, Pablo ; Markus, Hugh S ; Wang, Kai ; Mathew, Christopher G ; Wason, James ; Palmer, Colin N.A ; Wichmann, H-Erich ; Plomin, Robert ; Willoughby, Ernest ; Rautanen, Anna ; Winkelmann, Juliane ; Wittig, Michael ; Trembath, Richard C ; Yaouanq, Jacqueline ; Viswanathan, Ananth C ; Zhang, Haitao ; Wood, Nicholas W ; Zuvich, Rebecca ; Deloukas, Panos ; Langford, Cordelia ; Duncanson, Audrey ; Oksenberg, Jorge R ; Pericak-Vance, Margaret A ; Haines, Jonathan L ; Olsson, Tomas ; Hillert, Jan ; Ivinson, Adrian J ; De Jager, Philip L ; Peltonen, Leena ; Stewart, Graeme J ; Hafler, David A ; Hauser, Stephen L ; Mcvean, Gil ; Donnelly, Peter ; Compston, Alastair

Nature, 2011, Vol.476(7359), p.214-219 [Peer Reviewed Journal]

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Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome

Yamada, Kayoko ; Lim, Jun ; Dale, Joseph M. ; Chen, Huaming ; Shinn, Paul ; Palm, Curtis J. ; Southwick, Audrey M. ; Wu, Hank C. ; Kim, Christopher ; Nguyen, Michelle ; Pham, Paul ; Cheuk, Rosa ; Karlin-Newmann, George ; Liu, Shirley X. ; Lam, Bao ; Sakano, Hitomi ; Wu, Troy ; Yu, Guixia ; Miranda, Molly ; Quach, Hong L. ; Tripp, Matthew ; Chang, Charlie H. ; Lee, Jeong M. ; Toriumi, Mitsue ; Tang, Carolyn C. ; Onodera, Courtney S. ; Deng, Justine M. ; Akiyama, Kenji ; Ansari, Yasser ; Arakawa, Takahiro ; Banh, Jenny ; Banno, Fumika ; Bowser, Leah ; Brooks, Shelise ; Carninci, Piero ; Chao, Qimin ; Choy, Nathan ; Enju, Akiko ; Goldsmith, Andrew D. ; Gurjal, Mani ; Hansen, Nancy F. ; Hayashizaki, Yoshihide ; Johnson-Hopson, Chanda ; Hsuan, Vickie W. ; Iida, Kei ; Karnes, Meagan ; Khan, Shehnaz ; Koesema, Eric ; Ishida, Junko ; Jiang, Paul X. ; Jones, Ted ; Kawai, Jun ; Kamiya, Asako ; Meyers, Cristina ; Nakajima, Maiko ; Narusaka, Mari ; Seki, Motoaki ; Sakurai, Tetsuya ; Satou, Masakazu ; Tamse, Racquel ; Vaysberg, Maria ; Wallender, Erika K. ; Wong, Cecilia ; Yamamura, Yuki ; Yuan, Shiaulou ; Shinozaki, Kazuo ; Davis, Ronald W. ; Theologis, Athanasios ; Ecker, Joseph R.

Science, 31 October 2003, Vol.302(5646), pp.842-846 [Peer Reviewed Journal]

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Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis

Beecham, Ashley H ; Patsopoulos, Nikolaos A ; Xifara, Dionysia K ; Davis, Mary F ; Kemppinen, Anu ; Cotsapas, Chris ; Shahi, Tejas S ; Spencer, Chris ; Booth, David ; Goris, An ; Oturai, Annette ; Saarela, Janna ; Fontaine, Bertrand ; Hemmer, Bernhard ; Martin, Claes ; Zipp, Frauke ; D’alfonso, Sandra ; Martinelli-Boneschi, Filippo ; Taylor, Bruce ; Harbo, Hanne F ; Kockum, Ingrid ; Hillert, Jan ; Olsson, Tomas ; Ban, Maria ; Oksenberg, Jorge R ; Hintzen, Rogier ; Barcellos, Lisa F ; Agliardi, Cristina ; Alfredsson, Lars ; Alizadeh, Mehdi ; Anderson, Carl ; Andrews, Robert ; Søndergaard, Helle Bach ; Baker, Amie ; Band, Gavin ; Baranzini, Sergio E ; Barizzone, Nadia ; Barrett, Jeffrey ; Bellenguez, Céline ; Bergamaschi, Laura ; Bernardinelli, Luisa ; Berthele, Achim ; Biberacher, Viola ; Binder, Thomas M C ; Blackburn, Hannah ; Bomfim, Izaura L ; Brambilla, Paola ; Broadley, Simon ; Brochet, Bruno ; Brundin, Lou ; Buck, Dorothea ; Butzkueven, Helmut ; Caillier, Stacy J ; Camu, William ; Carpentier, Wassila ; Cavalla, Paola ; Celius, Elisabeth G ; Coman, Irène ; Comi, Giancarlo ; Corrado, Lucia ; Cosemans, Leentje ; Cournu-Rebeix, Isabelle ; Cree, Bruce A C ; Cusi, Daniele ; Damotte, Vincent ; Defer, Gilles ; Delgado, Silvia R ; Deloukas, Panos ; Di Sapio, Alessia ; Dilthey, Alexander T ; Donnelly, Peter ; Dubois, Bénédicte ; Duddy, Martin ; Edkins, Sarah ; Elovaara, Irina ; Esposito, Federica ; Evangelou, Nikos ; Fiddes, Barnaby ; Field, Judith ; Franke, Andre ; Freeman, Colin ; Frohlich, Irene Y ; Galimberti, Daniela ; Gieger, Christian ; Gourraud, Pierre-Antoine ; Graetz, Christiane ; Graham, Andrew ; Grummel, Verena ; Guaschino, Clara ; Hadjixenofontos, Athena ; Hakonarson, Hakon ; Halfpenny, Christopher ; Hall, Gillian ; Hall, Per ; Hamsten, Anders ; Harley, James ; Harrower, Timothy ; Hawkins, Clive ; Hellenthal, Garrett ; Hillier, Charles ; Hobart, Jeremy ; Hoshi, Muni ; Hunt, Sarah E ; Jagodic, Maja ; Jelčić, Ilijas ; Jochim, Angela ; Kendall, Brian ; Kermode, Allan ; Kilpatrick, Trevor ; Koivisto, Keijo ; Konidari, Ioanna ; Korn, Thomas ; Kronsbein, Helena ; Langford, Cordelia ; Larsson, Malin ; Lathrop, Mark ; Lebrun-Frenay, Christine ; Lechner-Scott, Jeannette ; Lee, Michelle H ; Leone, Maurizio A ; Leppä, Virpi ; Liberatore, Giuseppe ; Lie, Benedicte A ; Lill, Christina M ; Lindén, Magdalena ; Link, Jenny ; Luessi, Felix ; Lycke, Jan ; Macciardi, Fabio ; Männistö, Satu ; Manrique, Clara P ; Martin, Roland ; Martinelli, Vittorio ; Mason, Deborah ; Mazibrada, Gordon ; Mccabe, Cristin ; Mero, Inger-Lise ; Mescheriakova, Julia ; Moutsianas, Loukas ; Myhr, Kjell-Morten ; Nagels, Guy ; Nicholas, Richard ; Nilsson, Petra ; Piehl, Fredrik ; Pirinen, Matti ; Price, Siân E ; Quach, Hong ; Reunanen, Mauri ; Robberecht, Wim ; Robertson, Neil P ; Rodegher, Mariaemma ; Rog, David ; Salvetti, Marco ; Schnetz-Boutaud, Nathalie C ; Sellebjerg, Finn ; Selter, Rebecca C ; Schaefer, Catherine ; Shaunak, Sandip ; Shen, Ling ; Shields, Simon ; Siffrin, Volker ; Slee, Mark ; Sorensen, Per Soelberg ; Sorosina, Melissa ; Sospedra, Mireia ; Spurkland, Anne ; Strange, Amy ; Sundqvist, Emilie ; Thijs, Vincent ; Thorpe, John ; Ticca, Anna ; Tienari, Pentti ; Van Duijn, Cornelia ; Visser, Elizabeth M ; Vucic, Steve ; Westerlind, Helga ; Wiley, James S ; Wilkins, Alastair ; Wilson, James F ; Winkelmann, Juliane ; Zajicek, John ; Zindler, Eva ; Haines, Jonathan L ; Pericak-Vance, Margaret A ; Ivinson, Adrian J ; Stewart, Graeme ; Hafler, David ; Hauser, Stephen L ; Compston, Alastair ; Mcvean, Gil ; De Jager, Philip ; Sawcer, Stephen ; Mccauley, Jacob L

Beecham, A. H., N. A. Patsopoulos, D. K. Xifara, M. F. Davis, A. Kemppinen, C. Cotsapas, T. S. Shahi, et al. 2013. “Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.” Nature genetics 45 (11): 10.1038/ng.2770. doi:10.1038/ng.2770. http://dx.doi.org/10.1038/ng.2770. [Peer Reviewed Journal]

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