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Multi-objective optimization for clustering 3-way gene expression data

Dembélé, Doulaye

Advances in Data Analysis and Classification, 2008, Vol.2(3), pp.211-225 [Peer Reviewed Journal]

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Fragile X Mental Retardation Protein (FMRP) controls diacylglycerol kinase activity in neurons

Tabet, Ricardos ; Moutin, Enora ; Becker, Jerome ; Heintz, Dimitri ; Fouillen, Laetitia ; Flatter, Eric ; Krezel, Wojciech ; Alunni, Violaine ; Koebel, Pascale ; Dembele, Doulaye ; Tassone, Flora ; Bardoni, Barbara ; Mandel, Jean-Louis ; Vitale, Nicolas ; Muller, Dominique ; Le Merrer, Julie ; Moine, Herve

Proceedings of the National Academy of Sciences of the United States of America, 27 May 2016, Vol.113(26), pp.E3619-E3628 [Peer Reviewed Journal]

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Fold change rank ordering statistics: a new method for detecting differentially expressed genes

Dembélé, Doulaye ; Kastner, Philippe

BMC Bioinformatics, 15 January 2014, Vol.15(1), p.14 [Peer Reviewed Journal]

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4
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Transcriptomic Analysis of Murine Embryos Lacking Endogenous Retinoic Acid Signaling

Paschaki, Marie ; Schneider, Carole ; Rhinn, Muriel ; Thibault-Carpentier, Christelle ; Dembélé, Doulaye ; Niederreither, Karen ; Dollé, Pascal ;Schubert, Michael (editor)

PLoS ONE, 2013, Vol.8(4) [Peer Reviewed Journal]

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Circulating Human Eosinophils Share a Similar Transcriptional Profile in Asthma and Other Hypereosinophilic Disorders (Eosinophils Transcriptome Analysis)

Barnig, Cindy ; Alsaleh, Ghada ; Jung, Nicolas ; Dembélé, Doulaye ; Paul, Nicodème ; Poirot, Anh ; Uring-Lambert, Béatrice ; Georgel, Philippe ; de Blay, Fréderic ; Bahram, Seiamak ;Unutmaz, Derya (Editor)

2015, Vol.10(11), p.e0141740 [Peer Reviewed Journal]

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B Cell Signature during Inactive Systemic Lupus Is Heterogeneous: Toward a Biological Dissection of Lupus (B Cell Signature during Inactive Systemic Lupus)

Garaud, Jean-Claude ; Schickel, Jean-Nicolas ; Blaison, Gilles ; Knapp, Anne-Marie ; Dembele, Doulaye ; Ruer-Laventie, Julie ; Korganow, Anne-Sophie ; Martin, Thierry ; Soulas-Sprauel, Pauline ; Pasquali, Jean-Louis ;Tsokos, George C. (Editor)

PLoS ONE, 2011, Vol.6(8), p.e23900 [Peer Reviewed Journal]

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Inhibition of histone deacetylases in rats self‐administering cocaine regulates lissencephaly gene‐1 and reelin gene expression, as revealed by microarray technique

Host, Lionel ; Anglard, Patrick ; Romieu, Pascal ; Thibault, Christelle ; Dembele, Doulaye ; Aunis, Dominique ; Zwiller, Jean

Journal of Neurochemistry, April 2010, Vol.113(1), pp.236-247 [Peer Reviewed Journal]

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8
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SOX2 Is an Oncogene Activated by Recurrent 3q26.3 Amplifications in Human Lung Squamous Cell Carcinomas ( SOX2 Is an Oncogene in LSCC)

Hussenet, Thomas ; Dali, Soraya ; Exinger, Julien ; Monga, Ben ; Jost, Bernard ; Dembelé, Doulaye ; Martinet, Nadine ; Thibault, Christelle ; Huelsken, Joerg ; Brambilla, Elisabeth ; du Manoir, Stanislas ;Idnurm, Alexander (Editor)

PLoS ONE, 2010, Vol.5(1), p.e8960 [Peer Reviewed Journal]

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Misregulated alternative splicing of BIN1 is associated with T tubule alterations and muscle weakness in myotonic dystrophy

Fugier, Charlotte ; Klein, Arnaud F ; Hammer, Caroline ; Vassilopoulos, Stéphane ; Ivarsson, Ylva ; Toussaint, Anne ; Tosch, Valérie ; Vignaud, Alban ; Ferry, Arnaud ; Messaddeq, Nadia ; Kokunai, Yosuke ; Tsuburaya, Rie ; De La Grange, Pierre ; Dembele, Doulaye ; Francois, Virginie ; Precigout, Guillaume ; Boulade-Ladame, Charlotte ; Hummel, Marie-Christine

Nature Medicine, June 2011, Vol.17(6), pp.720-5 [Peer Reviewed Journal]

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Hemidesmosome integrity protects the colon against colitis and colorectal cancer

De Arcangelis, Adèle ; Hamade, Hussein ; Alpy, Fabien ; Normand, Sylvain ; Bruyère, Emilie ; Lefebvre, Olivier ; Méchine-Neuville, Agnès ; Siebert, Stéphanie ; Pfister, Véronique ; Lepage, Patricia ; Laquerriere, Patrice ; Dembele, Doulaye ; Delanoye-Crespin, Anne ; Rodius, Sophie ; Robine, Sylvie ; Kedinger, Michèle ; Van Seuningen, Isabelle ; Simon-Assmann, Patricia ; Chamaillard, Mathias ; Labouesse, Michel ; Georges-Labouesse, Elisabeth

Gut, 2017, Vol.66(10), p.1748-1760 [Peer Reviewed Journal]

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Cyclin K and cyclin D1b are oncogenic in myeloma cells

Renoir Jack-Michel ; Wdzieczak-Bakala Joanna ; Jost Bernard ; Dembele Doulaye ; Liu Jian-Miao ; Andrieux Geoffroy ; Tchakarska Guergana ; Marsaud Véronique ; Sola Brigitte

Molecular Cancer, 01 May 2010, Vol.9(1), p.103 [Peer Reviewed Journal]

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The App-Runx1 Region Is Critical for Birth Defects and Electrocardiographic Dysfunctions Observed in a Down Syndrome Mouse Model (Heart Diseases Associated with Gene Dosage)

Raveau, Matthieu ; Lignon, Jacques M ; Nalesso, Valérie ; Duchon, Arnaud ; Groner, Yoram ; Sharp, Andrew J ; Dembele, Doulaye ; Brault, Véronique ; Hérault, Yann ;Fisher, Elizabeth M. C. (Editor)

PLoS Genetics, 2012, Vol.8(5), p.e1002724 [Peer Reviewed Journal]

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Genome-wide Analysis of RARβ Transcriptional Targets in Mouse Striatum Links Retinoic Acid Signaling with Huntington’s Disease and Other Neurodegenerative Disorders

Niewiadomska-Cimicka, Anna ; Krzyżosiak, Agnieszka ; Ye, Tao ; Podleśny-Drabiniok, Anna ; Dembélé, Doulaye ; Dollé, Pascal ; Krężel, Wojciech

Molecular Neurobiology, 2017, Vol.54(5), pp.3859-3878 [Peer Reviewed Journal]

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An adult tissue-specific stem cell molecular phenotype is activated in epithelial cancer stem cells and correlated to patient outcome

Hussenet, Thomas ; Dembélé, Doulaye ; Martinet, Nadine ; Vignaud, Jean-Michel ; Du Manoir, Stanislas

Cell Cycle, 15 January 2010, Vol.9(2), pp.321-327 [Peer Reviewed Journal]

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15
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Analysis of high-throughput biological data using their rank values

Dembélé, Doulaye

Statistical Methods in Medical Research, August 2019, Vol.28(8), pp.2276-2291 [Peer Reviewed Journal]

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16
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Systematic Gene Expression Mapping Clusters Nuclear Receptors According to Their Function in the Brain

Gofflot, Françoise ; Chartoire, Nathalie ; Vasseur, Laurent ; Heikkinen, Sami ; Dembele, Doulaye ; Le Merrer, Julie ; Auwerx, Johan

Cell, 2007, Vol.131(2), pp.405-418 [Peer Reviewed Journal]

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17
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Protracted abstinence from distinct drugs of abuse shows regulation of a common gene network

Le Merrer, Julie ; Befort, Katia ; Gardon, Olivier ; Filliol, Dominique ; Darcq, Emmanuel ; Dembele, Doulaye ; Becker, Jerome A. J. ; Kieffer, Brigitte L.

Addiction Biology, January 2012, Vol.17(1), pp.1-12 [Peer Reviewed Journal]

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18
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A python module to normalize microarray data by the quantile adjustment method

Baber, Ibrahima ; Tamby, Jean Philippe ; Manoukis, Nicholas C ; Sangaré, Djibril ; Doumbia, Seydou ; Traoré, Sekou F ; Maiga, Mohamed S ; Dembélé, Doulaye

Infection, Genetics and Evolution, 2011, Vol.11(4), pp.765-768 [Peer Reviewed Journal]

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19
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Genome‐wide analysis of POU3F2/BRN2 promoter occupancy in human melanoma cells reveals Kitl as a novel regulated target gene

Kobi, Dominique ; Steunou, Anne‐Lise ; Dembélé, Doulaye ; Legras, Stéphanie ; Larue, Lionel ; Nieto, Laurence ; Davidson, Irwin

Pigment Cell & Melanoma Research, June 2010, Vol.23(3), pp.404-418 [Peer Reviewed Journal]

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20
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Opposite phenotypes of muscle strength and locomotor function in mouse models of partial trisomy and monosomy 21 for the proximal Hspa13-App region

Brault, Véronique ; Duchon, Arnaud ; Romestaing, Caroline ; Sahún, Ignasi ; Pothion, Stéphanie ; Karout, Mona ; Borel, Christelle ; Dembele, Doulaye ; Bizot, Jean - Charles ; Messaddeq, Nadia ; Sharp, Andrew J. ; Roussel, Damien ; Antonarakis, Stylianos E. ; Dierssen, Mara ; Hérault, Yann

2015

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