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ConsDock: A new program for the consensus analysis of protein–ligand interactions

Paul, Nicodème ; Rognan, Didier

Proteins: Structure, Function, and Bioinformatics, 01 June 2002, Vol.47(4), pp.521-533 [Peer Reviewed Journal]

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Cullin 3 mediates SRC-3 ubiquitination and degradation to control the retinoic acid response

Ferry, Christine ; Gaouar, Samia ; Fischer, Benoit ; Boeglin, Marcel ; Paul, Nicodeme ; Samarut, Eric ; Piskunov, Aleksandr ; Pankotai-Bodo, Gabriella ; Brino, Laurent ; Rochette-Egly, Cecile

Proceedings of the National Academy of Sciences of the United States of America, 20 December 2011, Vol.108(51), pp.20603-20608 [Peer Reviewed Journal]

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3
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Circulating Human Eosinophils Share a Similar Transcriptional Profile in Asthma and Other Hypereosinophilic Disorders (Eosinophils Transcriptome Analysis)

Barnig, Cindy ; Alsaleh, Ghada ; Jung, Nicolas ; Dembélé, Doulaye ; Paul, Nicodème ; Poirot, Anh ; Uring-Lambert, Béatrice ; Georgel, Philippe ; de Blay, Fréderic ; Bahram, Seiamak ;Unutmaz, Derya (Editor)

2015, Vol.10(11), p.e0141740 [Peer Reviewed Journal]

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A de novo ADCY5 mutation causes early‐onset autosomal dominant chorea and dystonia

Carapito, Raphael ; Paul, Nicodème ; Untrau, Meiggie ; Le Gentil, Marion ; Ott, Louise ; Alsaleh, Ghada ; Jochem, Pierre ; Radosavljevic, Mirjana ; Le Caignec, Cédric ; David, Albert ; Damier, Philippe ; Isidor, Bertrand ; Bahram, Seiamak

Movement Disorders, March 2015, Vol.30(3), pp.423-427 [Peer Reviewed Journal]

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Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond–like features

Carapito, Raphael ; Konantz, Martina ; Paillard, Catherine ; Miao, Zhichao ; Pichot, Angélique ; Leduc, Magalie ; Yang, Yaping ; Bergstrom, Katie ; Mahoney, Donald ; Shardy, Deborah ; Alsaleh, Ghada ; Naegely, Lydie ; Kolmer, Aline ; Paul, Nicodème ; Hanauer, Antoine ; Rolli, Véronique ; Müller, Joëlle

Journal of Clinical Investigation, 01 November 2017, Vol.127(11), pp.4090-4103 [Peer Reviewed Journal]

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6
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Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency

Carapito, Raphael ; Carapito, Christine ; Morlon, Aurore ; Paul, Nicodème ; Vaca Jacome, Alvaro Sebastian ; Alsaleh, Ghada ; Rolli, Véronique ; Tahar, Ouria ; Aouadi, Ismail ; Rompais, Magali ; Delalande, François ; Pichot, Angélique ; Georgel, Philippe ; Messer, Laurent ; Sibilia, Jean ; Cianferani, Sarah ; Van Dorsselaer, Alain ; Bahram, Seiamak

Annals of the Rheumatic Diseases, 2018, Vol.77(11), p.1675-1687 [Peer Reviewed Journal]

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Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

Zavolan Mihaela ; Paul Nicodeme ; Tan Lit-Yeen ; Mcglincy Nicholas J ; Lilley Kathryn S ; Smith Christopher Wj

BMC Genomics, 01 October 2010, Vol.11(1), p.565 [Peer Reviewed Journal]

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Protein-altering MYH3 variants are associated with a spectrum of phenotypes extending to spondylocarpotarsal synostosis syndrome

Carapito, Raphael ; Goldenberg, Alice ; Paul, Nicodème ; Pichot, Angélique ; David, Albert ; Hamel, Antoine ; Dumant-Forest, Clémentine ; Leroux, Julien ; Ory, Benjamin ; Isidor, Bertrand ; Bahram, Seiamak

European Journal of Human Genetics, December 2016, Vol.24(12), pp.1746-1751 [Peer Reviewed Journal]

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Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

Mcglincy, Nicholas J ; Tan, Lit-Yeen ; Paul, Nicodeme ; Zavolan, Mihaela ; Lilley, Kathryn S ; Smith, Christopher Wj

BMC Genomics, 2010, Vol.11, p.565-565 [Peer Reviewed Journal]

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10
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Ubiquitin Receptor Protein UBASH3B Drives Aurora B Recruitment to Mitotic Microtubules

Krupina, Ksenia ; Kleiss, Charlotte ; Metzger, Thibaud ; Fournane, Sadek ; Schmucker, Stephane ; Hofmann, Kay ; Fischer, Benoit ; Paul, Nicodeme ; Porter, Iain Malcolm ; Raffelsberger, Wolfgang ; Poch, Olivier ; Swedlow, Jason Reese ; Brino, Laurent ; Sumara, Izabela

Developmental Cell, 11 January 2016, Vol.36(1), pp.63-78 [Peer Reviewed Journal]

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11
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Reduced DICER1 Expression Bestows Rheumatoid Arthritis Synoviocytes Proinflammatory Properties and Resistance to Apoptotic Stimuli

Alsaleh, Ghada ; Nehmar, Ramzi ; Blüml, Stephan ; Schleiss, Cédric ; Ostermann, Eleonore ; Dillenseger, Jean‐Philippe ; Sayeh, Amira ; Choquet, Philippe ; Dembele, Doulaye ; Francois, Antoine ; Salmon, Jean‐Hugues ; Paul, Nicodème ; Schabbauer, Gernot ; Bierry, Guillaume ; Meyer, Alain ; Gottenberg, Jacques‐Eric ; Haas, Gabrielle ; Pfeffer, Sebastien ; Vallat, Laurent ; Sibilia, Jean ; Bahram, Seiamak ; Georgel, Philippe

Arthritis & Rheumatology, August 2016, Vol.68(8), pp.1839-1848 [Peer Reviewed Journal]

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An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

Domingo-Calap, Pilar ; Schubert, Benjamin ; Joly, Mélanie ; Solis, Morgane ; Untrau, Meiggie ; Carapito, Raphael ; Georgel, Philippe ; Caillard, Sophie ; Fafi-Kremer, Samira ; Paul, Nicodème ; Kohlbacher, Oliver ; González-Candelas, Fernando ; Bahram, Seiamak ;Vignuzzi, Marco (editor)

PLoS Pathogens, 2018, Vol.14(10) [Peer Reviewed Journal]

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13
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Whole genome sequencing of 7 strains of Staphylococcus lugdunensis allows identification of mobile genetic elements

Argemi, Xavier ; Martin, Veronique ; Loux, Valentin ; Dahyot, Sandrine ; Lebeurre, Jérémie ; Guffroy, Aurélien ; Martin, Mickael ; Velay, Aurélie ; Keller, Daniel ; Riegel, Philippe ; Hansmann, Yves ; Paul, Nicodème ; Prévost, Gilles

Genome Biology and Evolution, 2017, Vol.9(5), pp.1183-1189 [Peer Reviewed Journal]

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14
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HIV-Specific B Cell Frequency Correlates with Neutralization Breadth in Patients Naturally Controlling HIV-Infection

Rouers, Angeline ; Klingler, Jéromine ; Su, Bin ; Samri, Assia ; Laumond, Géraldine ; Even, Sophie ; Avettand-Fenoel, Véronique ; Richetta, Clemence ; Paul, Nicodème ; Boufassa, Faroudy ; Hocqueloux, Laurent ; Mouquet, Hugo ; Rouzioux, Christine ; Lambotte, Olivier ; Autran, Brigitte ; Graff-Dubois, Stéphanie

EBioMedicine, July 2017, Vol.21, pp.158-169 [Peer Reviewed Journal]

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15
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A new MHC-linked susceptibility locus for primary Sjögren’s syndrome: MICA

Carapito, Raphael ; Gottenberg, Jacques - Eric ; Kotova, Irina ; Untrau, Meiggie ; Michel, Sandra ; Naegely, Lydie ; Aouadi, Ismail ; Kwemou, Marius ; Paul, Nicodème ; Pichot, Angélique ; Locke, James ; Bowman, Simon J ; Griffiths, Bridget ; Sivils, Kathy L ; Sibilia, Jean ; Inoko, Hidetoshi ; Micelli - Richard, Corinne ; Nocturne, Gaétane ; Ota, Masao ; Ng, Wan - Fai ; Mariette, Xavier ; Bahram, Seiamak

Human Molecular Genetics, 2017, Vol. 26(13), pp.2565-2576 [Peer Reviewed Journal]

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16
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SPA: A Probabilistic Algorithm for Spliced Alignment (SPA: A Spliced Alignment Algorithm)

van Nimwegen, Erik ; Paul, Nicodeme ; Sheridan, Robert ; Zavolan, Mihaela ;Blake, Judith (Editor) ; Hancock, John (Editor) ; Pavan, Bill (Editor) ; Stubbs, Lisa (Editor)

PLoS Genetics, 2006, Vol.2(4), p.e24 [Peer Reviewed Journal]

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17
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Identification of clustered microRNAs using an ab initio prediction method

Brownstein Michael J ; Pfeffer Sébastien ; Aravin Alexei ; Landgraf Pablo ; Paul Nicodème ; Sewer Alain ; Tuschl Thomas ; van Nimwegen Erik ; Zavolan Mihaela

BMC Bioinformatics, 01 November 2005, Vol.6(1), p.267 [Peer Reviewed Journal]

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18
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ZMIZ1 Variants Cause a Syndromic Neurodevelopmental Disorder

Carapito, Raphael ; Ivanova, Ekaterina L ; Morlon, Aurore ; Meng, Linyan ; Molitor, Anne ; Erdmann, Eva ; Kieffer, Bruno ; Pichot, Angélique ; Naegely, Lydie ; Kolmer, Aline ; Paul, Nicodème ; Hanauer, Antoine ; Tran Mau-Them, Frédéric ; Jean-Marçais, Nolwenn ; Hiatt, Susan M

The American Journal of Human Genetics, 07 February 2019, Vol.104(2), pp.319-330 [Peer Reviewed Journal]

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19
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Computational Analysis of Full-length cDNAs Reveals Frequent Coupling Between Transcriptional and Splicing Programs

Chern, Tzu - Ming ; Paul, Nicodeme ; Van Nimwegen, Erik ; Zavolan, Mihaela

DNA Research, 2008, Vol. 15(2), pp.63-72 [Peer Reviewed Journal]

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20
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Hemodynamic Forces Tune the Arrest, Adhesion, and Extravasation of Circulating Tumor Cells

Follain, Gautier ; Osmani, Naël ; Azevedo, Ana Sofia ; Allio, Guillaume ; Mercier, Luc ; Karreman, Matthia A ; Solecki, Gergely ; Garcia Leòn, Marìa Jesùs ; Lefebvre, Olivier ; Fekonja, Nina ; Hille, Claudia ; Chabannes, Vincent ; Dollé, Guillaume ; Metivet, Thibaut ; Hovsepian, François Der

Developmental Cell, 09 April 2018, Vol.45(1), pp.33-52.e12 [Peer Reviewed Journal]

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